Detailed information of SNP:
|
SNP ID:
sf0913673198(Gbrowse)
Chromosome: chr09 Position: 13673198 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 59.49% | 40.51% |
| All Indica | 795 | 90.44% | 9.56% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913673198 | T->C | LOC_Os09g23120(LOC_Os09g23120.1) | Synonymous |