Detailed information of SNP:
|
SNP ID:
sf0913674209(Gbrowse)
Chromosome: chr09 Position: 13674209 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 93.23% | 6.77% |
| All Indica | 798 | 92.73% | 7.27% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913674209 | C->T | LOC_Os09g23120(LOC_Os09g23120.1) | Synonymous |