Detailed information of SNP:
|
SNP ID:
sf0913715233(Gbrowse)
Chromosome: chr09 Position: 13715233 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 54.67% | 45.33% |
| All Indica | 796 | 85.18% | 14.82% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 210 | 80.48% | 19.52% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913715233 | C->T | INTERGENIC | None |