Detailed information of SNP:
|
SNP ID:
sf0913946364(Gbrowse)
Chromosome: chr09 Position: 13946364 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 92.88% | 7.12% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913946364 | C->T | INTERGENIC | None |