Detailed information of SNP:
|
SNP ID:
sf0914106944(Gbrowse)
Chromosome: chr09 Position: 14106944 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 76.96% | 23.04% |
| All Indica | 795 | 62.01% | 37.99% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 372 | 58.33% | 41.67% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 210 | 63.33% | 36.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914106944 | G->A | INTERGENIC | None |