Detailed information of SNP:
|
SNP ID:
sf0914107390(Gbrowse)
Chromosome: chr09 Position: 14107390 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 64.17% | 35.83% |
| All Indica | 797 | 39.15% | 60.85% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 41.60% | 58.40% |
| Indica II | 212 | 36.32% | 63.68% |
| Indica Intermediate | 210 | 37.62% | 62.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914107390 | C->T | INTERGENIC | None |