Detailed information of SNP:
|
SNP ID:
sf0914120073(Gbrowse)
Chromosome: chr09 Position: 14120073 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 52.82% | 47.18% |
| All Indica | 799 | 18.90% | 81.10% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 3.20% | 96.80% |
| Indica II | 213 | 32.86% | 67.14% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914120073 | C->G | INTERGENIC | None |