Detailed information of SNP:
|
SNP ID:
sf0914140145(Gbrowse)
Chromosome: chr09 Position: 14140145 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.71% | 44.29% |
| All Indica | 798 | 29.70% | 70.30% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 39.84% | 60.16% |
| Indica II | 213 | 20.19% | 79.81% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914140145 | C->T | INTERGENIC | None |