Detailed information of SNP:
|
SNP ID:
sf0914210023(Gbrowse)
Chromosome: chr09 Position: 14210023 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 74.31% | 25.69% |
| All Indica | 781 | 94.88% | 5.12% |
| All Japonica | 495 | 39.19% | 60.81% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 198 | 95.45% | 4.55% |
| Temperate Japonica | 333 | 17.42% | 82.58% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 7 | 14.29% | 85.71% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914210023 | A->G | LOC_Os09g23840(LOC_Os09g23840.1) | INTRON |