Detailed information of SNP:
|
SNP ID:
sf0914371822(Gbrowse)
Chromosome: chr09 Position: 14371822 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 85.07% | 14.93% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 494 | 62.35% | 37.65% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 84.13% | 15.87% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 66 | 33.33% | 66.67% |
| Group VI/Aromatic | 4 | 50.00% | 50.00% |
| Intermediate | 36 | 69.44% | 30.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914371822 | C->T | LOC_Os09g24210(LOC_Os09g24210.1) | INTRON |