Detailed information of SNP:
|
SNP ID:
sf0914399277(Gbrowse)
Chromosome: chr09 Position: 14399277 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 51.69% | 48.31% |
| All Indica | 773 | 24.06% | 75.94% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 362 | 29.28% | 70.72% |
| Indica II | 210 | 9.52% | 90.48% |
| Indica Intermediate | 201 | 29.85% | 70.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914399277 | T->C | INTERGENIC | None |