Detailed information of SNP:
|
SNP ID:
sf0914430216(Gbrowse)
Chromosome: chr09 Position: 14430216 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1232 | 73.70% | 26.30% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 316 | 2.53% | 97.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 283 | 0.71% | 99.29% |
| Tropical Japonica | 8 | 25.00% | 75.00% |
| Japonica Intermediate | 25 | 16.00% | 84.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914430216 | A->G | INTERGENIC | None |