Detailed information of SNP:
|
SNP ID:
sf0914517677(Gbrowse)
Chromosome: chr09 Position: 14517677 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.51% | 45.49% |
| All Indica | 798 | 26.69% | 73.31% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 32.80% | 67.20% |
| Indica II | 212 | 10.38% | 89.62% |
| Indica Intermediate | 211 | 32.23% | 67.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914517677 | C->T | INTERGENIC | None |