Detailed information of SNP:
|
SNP ID:
sf0914524815(Gbrowse)
Chromosome: chr09 Position: 14524815 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 82.44% | 17.56% |
| All Indica | 786 | 92.11% | 7.89% |
| All Japonica | 492 | 64.43% | 35.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 85.21% | 14.79% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 334 | 84.43% | 15.57% |
| Tropical Japonica | 92 | 10.87% | 89.13% |
| Japonica Intermediate | 66 | 37.88% | 62.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914524815 | C->T | INTERGENIC | None |