Detailed information of SNP:
|
SNP ID:
sf0914533180(Gbrowse)
Chromosome: chr09 Position: 14533180 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1268 | 98.19% | 1.81% |
| All Indica | 650 | 96.92% | 3.08% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 304 | 97.70% | 2.30% |
| Indica II | 169 | 95.27% | 4.73% |
| Indica Intermediate | 177 | 97.18% | 2.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914533180 | G->T | LOC_Os09g24440(LOC_Os09g24440.1) | Non-Synonymous SNP |