Detailed information of SNP:
|
SNP ID:
sf0914570623(Gbrowse)
Chromosome: chr09 Position: 14570623 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 78.62% | 21.38% |
| All Indica | 799 | 88.86% | 11.14% |
| All Japonica | 496 | 61.69% | 38.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 84.13% | 15.87% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914570623 | G->A | INTERGENIC | None |