Detailed information of SNP:
|
SNP ID:
sf0914574828(Gbrowse)
Chromosome: chr09 Position: 14574828 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1330 | 95.19% | 4.81% |
| All Indica | 772 | 92.23% | 7.77% |
| All Japonica | 440 | 99.55% | 0.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 84.86% | 15.14% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 314 | 100.00% | 0.00% |
| Tropical Japonica | 73 | 98.63% | 1.37% |
| Japonica Intermediate | 53 | 98.11% | 1.89% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914574828 | A->G | INTERGENIC | None |