Detailed information of SNP:
|
SNP ID:
sf0914577789(Gbrowse)
Chromosome: chr09 Position: 14577789 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 51.17% | 48.83% |
| All Indica | 790 | 81.90% | 18.10% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 372 | 78.49% | 21.51% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914577789 | A->G | INTERGENIC | None |