Detailed information of SNP:
|
SNP ID:
sf0914740738(Gbrowse)
Chromosome: chr09 Position: 14740738 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 60.58% | 39.42% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914740738 | T->C | LOC_Os09g24740(LOC_Os09g24740.1) | Non-Synonymous SNP |