Detailed information of SNP:
|
SNP ID:
sf0914762137(Gbrowse)
Chromosome: chr09 Position: 14762137 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 54.48% | 45.52% |
| All Indica | 777 | 87.26% | 12.74% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 369 | 85.09% | 14.91% |
| Indica II | 203 | 88.67% | 11.33% |
| Indica Intermediate | 205 | 89.76% | 10.24% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914762137 | G->A | LOC_Os09g24790(LOC_Os09g24790.1) | Synonymous |