Detailed information of SNP:
|
SNP ID:
sf0914763057(Gbrowse)
Chromosome: chr09 Position: 14763057 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1300 | 57.92% | 42.08% |
| All Indica | 693 | 23.81% | 76.19% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 57 | 78.95% | 21.05% |
| Indica I | 319 | 23.82% | 76.18% |
| Indica II | 188 | 32.98% | 67.02% |
| Indica Intermediate | 186 | 14.52% | 85.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914763057 | A->G | LOC_Os09g24790(LOC_Os09g24790.1) | Synonymous |