Detailed information of SNP:
SNP ID:
sf0914827138(Gbrowse)
Chromosome: chr09 Position: 14827138 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1417 | 62.10% | 37.90% |
All Indica | 799 | 99.00% | 1.00% |
All Japonica | 497 | 0.60% | 99.40% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 96.71% | 3.29% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 0.60% | 99.40% |
Tropical Japonica | 94 | 0.00% | 100.00% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0914827138 | T->C | INTERGENIC | None |