Detailed information of SNP:
|
SNP ID:
sf0914836472(Gbrowse)
Chromosome: chr09 Position: 14836472 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1268 | 88.17% | 11.83% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 355 | 60.56% | 39.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 236 | 63.98% | 36.02% |
| Tropical Japonica | 71 | 52.11% | 47.89% |
| Japonica Intermediate | 48 | 56.25% | 43.75% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 33 | 84.85% | 15.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914836472 | T->C | LOC_Os09g24850(LOC_Os09g24850.1) | Non-Synonymous SNP |