Detailed information of SNP:
|
SNP ID:
sf0914838743(Gbrowse)
Chromosome: chr09 Position: 14838743 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1264 | 56.88% | 43.12% |
| All Indica | 651 | 98.16% | 1.84% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 263 | 99.24% | 0.76% |
| Indica II | 199 | 95.98% | 4.02% |
| Indica Intermediate | 189 | 98.94% | 1.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 38 | 34.21% | 65.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914838743 | T->C | INTERGENIC | None |