Detailed information of SNP:
|
SNP ID:
sf0914906850(Gbrowse)
Chromosome: chr09 Position: 14906850 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1277 | 96.32% | 3.68% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 362 | 88.12% | 11.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 253 | 99.21% | 0.79% |
| Tropical Japonica | 60 | 48.33% | 51.67% |
| Japonica Intermediate | 49 | 79.59% | 20.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914906850 | C->T | INTERGENIC | None |