Detailed information of SNP:
|
SNP ID:
sf0914914289(Gbrowse)
Chromosome: chr09 Position: 14914289 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1281 | 75.57% | 24.43% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 369 | 20.87% | 79.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 253 | 22.92% | 77.08% |
| Tropical Japonica | 62 | 1.61% | 98.39% |
| Japonica Intermediate | 54 | 33.33% | 66.67% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 35 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914914289 | A->G | LOC_Os09g24965(LOC_Os09g24965.1) | UTR_5_PRIME |