Detailed information of SNP:
|
SNP ID:
sf0914980428(Gbrowse)
Chromosome: chr09 Position: 14980428 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 53.34% | 46.66% |
| All Indica | 791 | 73.96% | 26.04% |
| All Japonica | 494 | 26.32% | 73.68% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 371 | 68.73% | 31.27% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 207 | 76.33% | 23.67% |
| Temperate Japonica | 334 | 33.23% | 66.77% |
| Tropical Japonica | 92 | 6.52% | 93.48% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914980428 | T->C | INTERGENIC | None |