Detailed information of SNP:
|
SNP ID:
sf0914984760(Gbrowse)
Chromosome: chr09 Position: 14984760 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 52.27% | 47.73% |
| All Indica | 798 | 69.80% | 30.20% |
| All Japonica | 493 | 26.57% | 73.43% |
| Aus | 63 | 25.40% | 74.60% |
| Indica I | 375 | 66.40% | 33.60% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 210 | 65.71% | 34.29% |
| Temperate Japonica | 333 | 33.93% | 66.07% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914984760 | T->A | INTERGENIC | None |