Detailed information of SNP:
|
SNP ID:
sf0914988972(Gbrowse)
Chromosome: chr09 Position: 14988972 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 78.60% | 21.40% |
| All Indica | 782 | 69.69% | 30.31% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 366 | 65.85% | 34.15% |
| Indica II | 206 | 80.58% | 19.42% |
| Indica Intermediate | 210 | 65.71% | 34.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914988972 | C->T | INTERGENIC | None |