Detailed information of SNP:
|
SNP ID:
sf0914989284(Gbrowse)
Chromosome: chr09 Position: 14989284 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 59.27% | 40.73% |
| All Indica | 799 | 30.79% | 69.21% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 33.60% | 66.40% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914989284 | A->T | INTERGENIC | None |