Detailed information of SNP:
|
SNP ID:
sf0914998956(Gbrowse)
Chromosome: chr09 Position: 14998956 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 94.57% | 5.43% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0914998956 | C->T | INTERGENIC | None |