Detailed information of SNP:
|
SNP ID:
sf0915041463(Gbrowse)
Chromosome: chr09 Position: 15041463 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 88.72% | 11.28% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 481 | 70.48% | 29.52% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 324 | 79.01% | 20.99% |
| Tropical Japonica | 91 | 41.76% | 58.24% |
| Japonica Intermediate | 66 | 68.18% | 31.82% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915041463 | C->A | INTERGENIC | None |