Detailed information of SNP:
|
SNP ID:
sf0915068344(Gbrowse)
Chromosome: chr09 Position: 15068344 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 79.48% | 20.52% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 497 | 50.50% | 49.50% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 66.87% | 33.13% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915068344 | G->A | INTERGENIC | None |