Detailed information of SNP:
|
SNP ID:
sf0915087135(Gbrowse)
Chromosome: chr09 Position: 15087135 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 59.93% | 40.07% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915087135 | G->T | INTERGENIC | None |