Detailed information of SNP:
|
SNP ID:
sf0915088224(Gbrowse)
Chromosome: chr09 Position: 15088224 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 86.13% | 13.87% |
| All Indica | 776 | 79.90% | 20.10% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 45.16% | 54.84% |
| Indica I | 366 | 85.25% | 14.75% |
| Indica II | 210 | 73.81% | 26.19% |
| Indica Intermediate | 200 | 76.50% | 23.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915088224 | C->G | INTERGENIC | None |