Detailed information of SNP:
|
SNP ID:
sf0915104889(Gbrowse)
Chromosome: chr09 Position: 15104889 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 86.31% | 13.69% |
| All Indica | 772 | 79.92% | 20.08% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 50.79% | 49.21% |
| Indica I | 365 | 84.66% | 15.34% |
| Indica II | 205 | 74.15% | 25.85% |
| Indica Intermediate | 202 | 77.23% | 22.77% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915104889 | G->A | INTERGENIC | None |