Detailed information of SNP:
|
SNP ID:
sf0915124885(Gbrowse)
Chromosome: chr09 Position: 15124885 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 96.01% | 3.99% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 459 | 88.89% | 11.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 70 | 37.14% | 62.86% |
| Japonica Intermediate | 59 | 91.53% | 8.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915124885 | A->G | INTERGENIC | None |