Detailed information of SNP:
|
SNP ID:
sf0915180121(Gbrowse)
Chromosome: chr09 Position: 15180121 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1318 | 89.23% | 10.77% |
| All Indica | 701 | 80.17% | 19.83% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 325 | 79.08% | 20.92% |
| Indica II | 189 | 75.13% | 24.87% |
| Indica Intermediate | 187 | 87.17% | 12.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915180121 | C->T | INTERGENIC | None |