Detailed information of SNP:
|
SNP ID:
sf0915180271(Gbrowse)
Chromosome: chr09 Position: 15180271 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 59.33% | 40.67% |
| All Indica | 765 | 95.56% | 4.44% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 348 | 94.54% | 5.46% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915180271 | A->G | INTERGENIC | None |