Detailed information of SNP:
|
SNP ID:
sf0915199016(Gbrowse)
Chromosome: chr09 Position: 15199016 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 69.11% | 30.89% |
| All Indica | 798 | 51.63% | 48.37% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 374 | 46.26% | 53.74% |
| Indica II | 213 | 59.15% | 40.85% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915199016 | G->A | INTERGENIC | None |