Detailed information of SNP:
|
SNP ID:
sf0915248061(Gbrowse)
Chromosome: chr09 Position: 15248061 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1208 | 99.59% | 0.41% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 307 | 98.37% | 1.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 231 | 98.70% | 1.30% |
| Tropical Japonica | 40 | 100.00% | 0.00% |
| Japonica Intermediate | 36 | 94.44% | 5.56% |
| Group VI/Aromatic | 7 | 100.00% | 0.00% |
| Intermediate | 31 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915248061 | G->T | INTERGENIC | None |