Detailed information of SNP:
|
SNP ID:
sf0915283647(Gbrowse)
Chromosome: chr09 Position: 15283647 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 95.18% | 4.82% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 469 | 89.34% | 10.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 93.69% | 6.31% |
| Tropical Japonica | 77 | 93.51% | 6.49% |
| Japonica Intermediate | 59 | 59.32% | 40.68% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915283647 | C->T | LOC_Os09g25490(LOC_Os09g25490.1) | Synonymous |