Detailed information of SNP:
|
SNP ID:
sf0915297742(Gbrowse)
Chromosome: chr09 Position: 15297742 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 96.26% | 3.74% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 472 | 89.62% | 10.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 94.55% | 5.45% |
| Tropical Japonica | 80 | 93.75% | 6.25% |
| Japonica Intermediate | 62 | 58.06% | 41.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915297742 | A->G | INTERGENIC | None |