Detailed information of SNP:
|
SNP ID:
sf0915337713(Gbrowse)
Chromosome: chr09 Position: 15337713 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 95.82% | 4.18% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 490 | 90.20% | 9.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 94.31% | 5.69% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 63 | 61.90% | 38.10% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915337713 | G->A | LOC_Os09g25560(LOC_Os09g25560.1) | UTR_3_PRIME |