Detailed information of SNP:
|
SNP ID:
sf0915375132(Gbrowse)
Chromosome: chr09 Position: 15375132 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 59.05% | 40.95% |
| All Indica | 794 | 96.47% | 3.53% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 46 | 86.96% | 13.04% |
| Indica I | 372 | 96.51% | 3.49% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915375132 | A->C | INTERGENIC | None |