Detailed information of SNP:
|
SNP ID:
sf0915431594(Gbrowse)
Chromosome: chr09 Position: 15431594 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 85.72% | 14.28% |
| All Indica | 769 | 74.64% | 25.36% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 66.67% | 33.33% |
| Indica II | 207 | 86.47% | 13.53% |
| Indica Intermediate | 193 | 77.20% | 22.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915431594 | G->A | LOC_Os09g25730(LOC_Os09g25730.1) | INTRON |