Detailed information of SNP:
|
SNP ID:
sf0915450164(Gbrowse)
Chromosome: chr09 Position: 15450164 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.33% | 42.67% |
| All Indica | 799 | 34.04% | 65.96% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 42.67% | 57.33% |
| Indica II | 213 | 19.72% | 80.28% |
| Indica Intermediate | 211 | 33.18% | 66.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915450164 | C->T | LOC_Os09g25784(LOC_Os09g25784.1) | INTRON |