Detailed information of SNP:
|
SNP ID:
sf0915451928(Gbrowse)
Chromosome: chr09 Position: 15451928 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 84.90% | 15.10% |
| All Indica | 797 | 73.90% | 26.10% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 64.44% | 35.56% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915451928 | G->A | LOC_Os09g25784(LOC_Os09g25784.2) | INTRON |
| sf0915451928 | G->A | LOC_Os09g25784(LOC_Os09g25784.1) | INTRON |