Detailed information of SNP:
|
SNP ID:
sf0915455403(Gbrowse)
Chromosome: chr09 Position: 15455403 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1362 | 87.59% | 12.41% |
| All Indica | 742 | 77.63% | 22.37% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 343 | 69.68% | 30.32% |
| Indica II | 202 | 89.60% | 10.40% |
| Indica Intermediate | 197 | 79.19% | 20.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915455403 | C->G | INTERGENIC | None |