Detailed information of SNP:
|
SNP ID:
sf0915456996(Gbrowse)
Chromosome: chr09 Position: 15456996 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 82.79% | 17.21% |
| All Indica | 798 | 73.18% | 26.82% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 64.27% | 35.73% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0915456996 | A->G | LOC_Os09g25800(LOC_Os09g25800.1) | INTRON |